「テンプレート:PCR primers References」の版間の差分
提供: 広島大学デジタル博物館
ナビゲーションに移動検索に移動| (2人の利用者による、間の13版が非表示) | |||
| 5行目: | 5行目: | ||
*[[Handa_Nakahara_Tsubota_Deguchi_Nakano_2003|Handa, S., Nakahara, M., Tsubota, H., Deguchi, H. & Nakano, T. 2003. A new aerial alga, ''Stichococcus ampulliformis'' sp. nov. (Trebouxiophyceae, Chlorophyta) from Japan. Phycol. Res. 51: 203-210.]] | *[[Handa_Nakahara_Tsubota_Deguchi_Nakano_2003|Handa, S., Nakahara, M., Tsubota, H., Deguchi, H. & Nakano, T. 2003. A new aerial alga, ''Stichococcus ampulliformis'' sp. nov. (Trebouxiophyceae, Chlorophyta) from Japan. Phycol. Res. 51: 203-210.]] | ||
*[http://www.mapress.com/phytotaxa/content/2014/f/pt00181p162.pdf Inoue, Y. & Tsubota, H. 2014. On the systematic position of the genus ''Timmiella'' (Dicranidae, Bryopsida) and its allied genera, with the description of a new family Timmiellaceae. Phytotaxa 181: 151–162.] | *[http://www.mapress.com/phytotaxa/content/2014/f/pt00181p162.pdf Inoue, Y. & Tsubota, H. 2014. On the systematic position of the genus ''Timmiella'' (Dicranidae, Bryopsida) and its allied genera, with the description of a new family Timmiellaceae. Phytotaxa 181: 151–162.] | ||
| + | *[[Inoue_et_al_2011|Inoue, Y., Tsubota, H., Kubo, H., Uchida, S., Mukai, S., Shimamura, M. & Deguchi, H. 2011. A note on ''Pottia intermedia'' (Turner) Fürnr. (Pottiaceae, Bryopsida) with special reference to its phylogeny and new localities in SW Japan. Hikobia 16: 67–78.]] | ||
*[[Inoue_Tsubota_Sato_Yamaguchi_2012|Inoue, Y., Tsubota, H., Sato, H. & Yamaguchi, T. 2012. Phylogenetic note on ''Pachyneuropsis miyagii'' T.Yamag. (Pottiaceae, Bryophyta). Hikobia 16: 221–228.]] | *[[Inoue_Tsubota_Sato_Yamaguchi_2012|Inoue, Y., Tsubota, H., Sato, H. & Yamaguchi, T. 2012. Phylogenetic note on ''Pachyneuropsis miyagii'' T.Yamag. (Pottiaceae, Bryophyta). Hikobia 16: 221–228.]] | ||
| + | *[[Jordan_et_al_1996|Jordan, W.C., Courtney, M.W. & Neigel, J.E. 1996. Low levels of intraspecific genetic variation at a rapidly evolving chloroplast DNA locus in North American duckweeds (Lemnaceae). Am. J. Bot. 83: 430–439.]] | ||
*[[Kocher_White_1992|Kocher, T. D. & White, T. J. 1992. Evolutionary analysis via PCR. ''In'' Erlich, H. A. (ed.), PCR Technology: Principles and Applications for DNA Amplification, pp. 137–147. Oxford University Press, New York. | *[[Kocher_White_1992|Kocher, T. D. & White, T. J. 1992. Evolutionary analysis via PCR. ''In'' Erlich, H. A. (ed.), PCR Technology: Principles and Applications for DNA Amplification, pp. 137–147. Oxford University Press, New York. | ||
]] | ]] | ||
*[[Manhart_1994|Manhart, J. R. 1994. Phylogenetic analysis of green plant rbcL sequences. Mol. Phylogenet. Evol. 3(2): 114-127.]] | *[[Manhart_1994|Manhart, J. R. 1994. Phylogenetic analysis of green plant rbcL sequences. Mol. Phylogenet. Evol. 3(2): 114-127.]] | ||
*[[Masuzaki_et_al_2010|Masuzaki, H., Shimamura, M., Furuki, T., Tsubota, H., Yamaguchi, T., A. M., Haji Mohamed & Deguchi, H. 2010. Systematic position of the enigmatic liverwort ''Mizutania'' (Mizutaniaceae, Marchantiophyta) inferred from molecular phylogenetic analyses. Taxon 59(2): 448-458.]] | *[[Masuzaki_et_al_2010|Masuzaki, H., Shimamura, M., Furuki, T., Tsubota, H., Yamaguchi, T., A. M., Haji Mohamed & Deguchi, H. 2010. Systematic position of the enigmatic liverwort ''Mizutania'' (Mizutaniaceae, Marchantiophyta) inferred from molecular phylogenetic analyses. Taxon 59(2): 448-458.]] | ||
| + | *[[Masuzaki_et_al_2011|Masuzaki, H., Furuki, T., Dalton, P. J., Tsubota, H., Seppelt, R. D. & Deguchi, H. 2011. The phylogenetic position of ''Vandiemenia ratkowskiana'' (Metzgeriales, Marchantiophyta). Hikobia 16: 51–57.]] | ||
*[[Medlin_Elwood_Stickel_Sogin_1988|Medlin, L., Elwood, H. J., Stickel, S. & Sogin, M. L. 1988. The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene 71: 491-499. | *[[Medlin_Elwood_Stickel_Sogin_1988|Medlin, L., Elwood, H. J., Stickel, S. & Sogin, M. L. 1988. The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene 71: 491-499. | ||
]] | ]] | ||
| 19行目: | 22行目: | ||
*[[Oguri_Yamaguchi_Tsubota_Deguchi_Murakami_2013|Oguri, E., Yamaguchi, T., Tsubota, H., Deguchi, H. & Murakami, N. 2013. Geographical origin of ''Leucobryum boninense'' Sull. & Lesq. (Leucobryaceae, Musci) endemic to the Bonin Islands, Japan. Ecol. Evol. 3(4): 753–762.]] DOI: 10.1002/ece3.492. | *[[Oguri_Yamaguchi_Tsubota_Deguchi_Murakami_2013|Oguri, E., Yamaguchi, T., Tsubota, H., Deguchi, H. & Murakami, N. 2013. Geographical origin of ''Leucobryum boninense'' Sull. & Lesq. (Leucobryaceae, Musci) endemic to the Bonin Islands, Japan. Ecol. Evol. 3(4): 753–762.]] DOI: 10.1002/ece3.492. | ||
*[http://www.nature.com/nature/journal/v322/n6079/abs/322572a0.html Ohyama, K., Fukuzawa, H., Kohchi, T., Shirai, H., Sano, T., Sano, S., Umesono, K., Shiki, Y., Takeuchi, M., Chang, Z., Aota, S., Inokuchi, H. & Ozeki, H. 1986. Chloroplast gene organization deduced from complete sequence of liverwort ''Marchantia polymorpha'' chloroplast DNA. Nature 322: 572-574.] | *[http://www.nature.com/nature/journal/v322/n6079/abs/322572a0.html Ohyama, K., Fukuzawa, H., Kohchi, T., Shirai, H., Sano, T., Sano, S., Umesono, K., Shiki, Y., Takeuchi, M., Chang, Z., Aota, S., Inokuchi, H. & Ozeki, H. 1986. Chloroplast gene organization deduced from complete sequence of liverwort ''Marchantia polymorpha'' chloroplast DNA. Nature 322: 572-574.] | ||
| + | *[[Olsson_et_al_2009|Olsson, S., Buchbender, V., Enroth, J., Hedenäs, L., Huttunen, S. & Quandt, D. 2009. Evolution of the Neckeraceae (Bryophyta): resolving the backbone phylogeny and identifying ancestral character states. Syst. Biodivers. 7: 419–432.]] | ||
*[[Sang_Crawford_Stuessy_1997|Sang, T., Crawford, D. J. & Stuessy, T. F. 1997. Chloroplast DNA phylogeny, reticulate evolution, and biogeography of ''Paeonia'' (Paeoniaceae). Am. J. Bot. 84: 1120–1136.]] | *[[Sang_Crawford_Stuessy_1997|Sang, T., Crawford, D. J. & Stuessy, T. F. 1997. Chloroplast DNA phylogeny, reticulate evolution, and biogeography of ''Paeonia'' (Paeoniaceae). Am. J. Bot. 84: 1120–1136.]] | ||
*[[Souza-Chies_Bittar_Nadot_Carter_Besin_Lejeune_1997|Souza-Chies, T. T., Bittar, G., Nadot, S., Carter, L., Besin, E. & Lejeune, B. 1997. Phylogenetic analysis of Iridaceae with parsimony and distance methods using the plastid gene ''rps''4. Pl. Syst. Evol. 204: 109–123.]] | *[[Souza-Chies_Bittar_Nadot_Carter_Besin_Lejeune_1997|Souza-Chies, T. T., Bittar, G., Nadot, S., Carter, L., Besin, E. & Lejeune, B. 1997. Phylogenetic analysis of Iridaceae with parsimony and distance methods using the plastid gene ''rps''4. Pl. Syst. Evol. 204: 109–123.]] | ||
| 31行目: | 35行目: | ||
*[[坪田・惠良・池田・久保・武内・中原-坪田・内田・向井_2015|Tsubota, H., Era, Y., Ikeda, S., Kubo, H., Takeuchi, K., Nakahara-Tsubota, M., Uchida, S. & Mukai, S. 2015a. Notes on naturalized plants in Hiroshima Prefecture, SW Japan: 6. New locality of ''Cotula australis'' (Sieber ex Spreng.) Hook.f. (Asteraceae). Hikobia 17(1): 73-79. [坪田博美・惠良友三郎・池田誠慈・久保晴盛・武内一恵・中原-坪田美保・内田慎治・向井誠二. 2015a. 広島の帰化植物6．マメカミツレ. Hikobia 17(1): 73-79.]]] | *[[坪田・惠良・池田・久保・武内・中原-坪田・内田・向井_2015|Tsubota, H., Era, Y., Ikeda, S., Kubo, H., Takeuchi, K., Nakahara-Tsubota, M., Uchida, S. & Mukai, S. 2015a. Notes on naturalized plants in Hiroshima Prefecture, SW Japan: 6. New locality of ''Cotula australis'' (Sieber ex Spreng.) Hook.f. (Asteraceae). Hikobia 17(1): 73-79. [坪田博美・惠良友三郎・池田誠慈・久保晴盛・武内一恵・中原-坪田美保・内田慎治・向井誠二. 2015a. 広島の帰化植物6．マメカミツレ. Hikobia 17(1): 73-79.]]] | ||
*[[坪田・池田・井上・内田・向井_2015|Tsubota, H., Ikeda, S., Inoue, Y., Uchida, S. & Mukai, S. 2015b. Current status of ''Lysimachia sikokiana'' Miq. (Primulaceae) in Hiroshima Prefecture, SW Japan. Hikobia 17(1): 81-88. [坪田博美・池田誠慈・井上侑哉・内田慎治・向井誠二. 2015b. 広島県のモロコシソウ''Lysimachia sikokiana'' Miq.の現状について. Hikobia 17(1): 81-88.]]] | *[[坪田・池田・井上・内田・向井_2015|Tsubota, H., Ikeda, S., Inoue, Y., Uchida, S. & Mukai, S. 2015b. Current status of ''Lysimachia sikokiana'' Miq. (Primulaceae) in Hiroshima Prefecture, SW Japan. Hikobia 17(1): 81-88. [坪田博美・池田誠慈・井上侑哉・内田慎治・向井誠二. 2015b. 広島県のモロコシソウ''Lysimachia sikokiana'' Miq.の現状について. Hikobia 17(1): 81-88.]]] | ||
| + | *[[Werner_et_al_2009|Werner, O., Patiño, J., González-Mancebo, J. M., Gabriel, R. M. A. & Ros, R. M. 2009. The taxonomic status and the geographical relationships of the Macaronesian endemic moss ''Fissidens luisieri'' (Fissidentaceae) based on DNA sequence data. Bryologist 112: 315–324.]] | ||
| + | *[[White_Bruns_Lee_Taylor_1990|White, T. J., Bruns, T., Lee, S. & Taylor, J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. ''In'' Innis, M. A., Gelfand, D. H., Sninskey, J. J. & White, T. J. (eds.), PCR Protocols: A Guide to Methods and Applications, pp. 315-322. Academic Press, Inc., San Diego.]] | ||
2019年8月26日 (月) 13:28時点における版
- Bruni, I., Galimberti, A., Caridi, L., Scaccabarozzi, D., De Mattia, F., Casiraghi, M. & Labra, M. 2015. A DNA barcoding approach to identify plant species in multiflower honey. Food Chem. 170: 308-315.
- Buck, W. R., Goffinet, B. & Shaw, A. J. 2000. Testing morphological concepts of orders of pleurocarpous mosses (Bryophyta) using phylogenetic reconstructions based on trnL-trnF and rps4 sequences. Mol. Phylogenet. Evol. 16: 180-198.
- Demesure, B., Sodzi, N. & Petit, R. J. 1995. A set of universal primers for amplification of polymorphic non-coding regions of mitochondrial and chloroplast DNA in plants. Mol. Ecol. 4: 129-131.
- Hamilton, M. B. 1999. Four primer pairs for the amplification of chloroplast intergenic regions with intraspecific variation. Mol. Ecol. 8: 521–523.
- Handa, S., Nakahara, M., Tsubota, H., Deguchi, H. & Nakano, T. 2003. A new aerial alga, Stichococcus ampulliformis sp. nov. (Trebouxiophyceae, Chlorophyta) from Japan. Phycol. Res. 51: 203-210.
- Inoue, Y. & Tsubota, H. 2014. On the systematic position of the genus Timmiella (Dicranidae, Bryopsida) and its allied genera, with the description of a new family Timmiellaceae. Phytotaxa 181: 151–162.
- Inoue, Y., Tsubota, H., Kubo, H., Uchida, S., Mukai, S., Shimamura, M. & Deguchi, H. 2011. A note on Pottia intermedia (Turner) Fürnr. (Pottiaceae, Bryopsida) with special reference to its phylogeny and new localities in SW Japan. Hikobia 16: 67–78.
- Inoue, Y., Tsubota, H., Sato, H. & Yamaguchi, T. 2012. Phylogenetic note on Pachyneuropsis miyagii T.Yamag. (Pottiaceae, Bryophyta). Hikobia 16: 221–228.
- Jordan, W.C., Courtney, M.W. & Neigel, J.E. 1996. Low levels of intraspecific genetic variation at a rapidly evolving chloroplast DNA locus in North American duckweeds (Lemnaceae). Am. J. Bot. 83: 430–439.
- Kocher, T. D. & White, T. J. 1992. Evolutionary analysis via PCR. In Erlich, H. A. (ed.), PCR Technology: Principles and Applications for DNA Amplification, pp. 137–147. Oxford University Press, New York.
- Manhart, J. R. 1994. Phylogenetic analysis of green plant rbcL sequences. Mol. Phylogenet. Evol. 3(2): 114-127.
- Masuzaki, H., Shimamura, M., Furuki, T., Tsubota, H., Yamaguchi, T., A. M., Haji Mohamed & Deguchi, H. 2010. Systematic position of the enigmatic liverwort Mizutania (Mizutaniaceae, Marchantiophyta) inferred from molecular phylogenetic analyses. Taxon 59(2): 448-458.
- Masuzaki, H., Furuki, T., Dalton, P. J., Tsubota, H., Seppelt, R. D. & Deguchi, H. 2011. The phylogenetic position of Vandiemenia ratkowskiana (Metzgeriales, Marchantiophyta). Hikobia 16: 51–57.
- Medlin, L., Elwood, H. J., Stickel, S. & Sogin, M. L. 1988. The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene 71: 491-499.
- Nadot, S., Bajon, R. & Lejeune, B. 1994. The chloroplast gene rps4 as a tool for the study of Poaceae phylogeny. Pl. Syst. Evol. 191: 27–38.
- Nakahara, M., Handa, S., Watanabe, S. & Deguchi, H. 2004a. Choricystis minor as a new symbiont of simultaneous two-species association with Paramecium bursaria and implications for its phylogeny. Symbiosis 36: 127-151.
- Nakahara, M., Tsubota, H., Handa, S., Watanabe, S. & Deguchi, H. 2004b. Molecular phylogeny of Chlorella-like symbiotic algae in Paramecium bursaria based on 18S rRNA gene sequences. Hikobia 14: 129-142.
- Newmaster, S. G. & Ragupathy, S. 2009. Testing plant barcoding in a sister species complex of pantropical Acacias (Mimosoideae, Fabaceae). Mol. Ecol. Resour. 9 (Suppl. 1): 172-180.
- Oguri, E., Yamaguchi, T., Tsubota, H. & Deguchi, H. 2003. A preliminary phylogenetic study of the genus Leucobryum (Leucobryaceae, Musci) in Asia and the Pacific based on ITS and rbcL sequences. Hikobia 14(1): 45-53.
- Oguri, E., Yamaguchi, T., Tsubota, H., Deguchi, H. & Murakami, N. 2013. Geographical origin of Leucobryum boninense Sull. & Lesq. (Leucobryaceae, Musci) endemic to the Bonin Islands, Japan. Ecol. Evol. 3(4): 753–762. DOI: 10.1002/ece3.492.
- Ohyama, K., Fukuzawa, H., Kohchi, T., Shirai, H., Sano, T., Sano, S., Umesono, K., Shiki, Y., Takeuchi, M., Chang, Z., Aota, S., Inokuchi, H. & Ozeki, H. 1986. Chloroplast gene organization deduced from complete sequence of liverwort Marchantia polymorpha chloroplast DNA. Nature 322: 572-574.
- Olsson, S., Buchbender, V., Enroth, J., Hedenäs, L., Huttunen, S. & Quandt, D. 2009. Evolution of the Neckeraceae (Bryophyta): resolving the backbone phylogeny and identifying ancestral character states. Syst. Biodivers. 7: 419–432.
- Sang, T., Crawford, D. J. & Stuessy, T. F. 1997. Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae). Am. J. Bot. 84: 1120–1136.
- Souza-Chies, T. T., Bittar, G., Nadot, S., Carter, L., Besin, E. & Lejeune, B. 1997. Phylogenetic analysis of Iridaceae with parsimony and distance methods using the plastid gene rps4. Pl. Syst. Evol. 204: 109–123.
- Taberlet, P., Gielly, L., Pautou, G. & Bouvet, J. 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Mol. Biol. 17: 1105-1109.
- Tate, J. A. & Simpson, B. B. 2003. Paraphyly of Tarasa (Malvaceae) and diverse origins of the polyploid species. Systematic Botany 28: 723-737.
- Tsubota, H., Nakao, N., Arikawa, T., Yamaguchi, T., Higuchi, M., Deguchi, H. & Seki, T. 1999. A preliminary phylogeny of Hypnales (Musci) as inferred from chloroplast rbcL sequence data. Bryol. Res. 7: 233-248.
- Tsubota, H., Nakao, N., Yamaguchi, T., Seki, T. & Deguchi, H. 2000. Preliminary phylogenetic relationships of the genus Brotherella and its allied genera (Hypnales, Musci) based on chloroplast rbcL sequence data. J. Hattori Bot. Lab. 88: 79-99. Abstract
- Tsubota, H., Akiyama, H., Yamaguchi, T. & Deguchi, H. 2001. Molecular phylogeny of the Sematophyllaceae (Hypnales, Musci) based on chloroplast rbcL sequences. J. Hattori Bot. Lab. 90: 221-240.
- Tsubota, H., Kubo, H. & Mukai, S. 2009. A new finding of seagrass Halophila nipponica J.Kuo (Hydrocharitaceae) from Miyajima Island in Hiroshima Prefecture, SW Japan. Hikobia 15: 339-347 (in Japanese with English Abstract and Tables). [坪田博美・久保晴盛・向井誠二. 2009. 広島県宮島近海で見つかったヤマトウミヒルモHalophila nipponica J.Kuoについて. Hikobia 15: 339-347.]
- Tsubota, H., Kubo, H., Takeuchi, K., Nakahara-Tsubota, M., Inoue, Y., Uchida, S. & Mukai, S. 2012. Notes on naturalized plants in Hiroshima Prefecture: 3. New locality and nrITS variation of Lactuca serriola L. (Asteraceae). Hikobia 16: 197-202 (in Japanese with English Abstract and Tables). [坪田博美・久保晴盛・武内一恵・中原-坪田美保・井上侑哉・内田慎治・向井誠二. 2012. 広島の帰化植物3.トゲヂシャとマルバトゲヂシャ. Hikobia 16: 197-202.]
- Tsubota, H., Kubo, H., Ohno, A., Inoue, Y., Nakahara-Tsubota, M., Takeuchi, K., Matsui, K., Uchida, S. & Mukai, S. 2013. Notes on naturalized plants in Hiroshima Prefecture: 4. New locality and phylogeny of Sisymbrium orientale L. (Brassicaceae) and its related species. Hikobia 16: 321-334. [坪田博美・久保晴盛・大野彰洋・井上侑哉・中原-坪田美保・武内一恵・松井健一・内田慎治・向井誠二. 2013. 広島の帰化植物4．イヌカキネガラシおよびその近縁種. Hikobia 16: 321-334.]
- Tsubota, H., Era, Y., Ikeda, S., Kubo, H., Takeuchi, K., Nakahara-Tsubota, M., Uchida, S. & Mukai, S. 2015a. Notes on naturalized plants in Hiroshima Prefecture, SW Japan: 6. New locality of Cotula australis (Sieber ex Spreng.) Hook.f. (Asteraceae). Hikobia 17(1): 73-79. [坪田博美・惠良友三郎・池田誠慈・久保晴盛・武内一恵・中原-坪田美保・内田慎治・向井誠二. 2015a. 広島の帰化植物6．マメカミツレ. Hikobia 17(1): 73-79.]
- Tsubota, H., Ikeda, S., Inoue, Y., Uchida, S. & Mukai, S. 2015b. Current status of Lysimachia sikokiana Miq. (Primulaceae) in Hiroshima Prefecture, SW Japan. Hikobia 17(1): 81-88. [坪田博美・池田誠慈・井上侑哉・内田慎治・向井誠二. 2015b. 広島県のモロコシソウLysimachia sikokiana Miq.の現状について. Hikobia 17(1): 81-88.]
- Werner, O., Patiño, J., González-Mancebo, J. M., Gabriel, R. M. A. & Ros, R. M. 2009. The taxonomic status and the geographical relationships of the Macaronesian endemic moss Fissidens luisieri (Fissidentaceae) based on DNA sequence data. Bryologist 112: 315–324.
- White, T. J., Bruns, T., Lee, S. & Taylor, J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In Innis, M. A., Gelfand, D. H., Sninskey, J. J. & White, T. J. (eds.), PCR Protocols: A Guide to Methods and Applications, pp. 315-322. Academic Press, Inc., San Diego.
