PCR primers nr 18SrRNA ITSs
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PCR primers
nuclear
18S rRNA gene and ITS region
Analyzed region | Forward / Reverse | Primer name | Sequence (5'–3') | References | For |
18S rRNA gene | Forward | 18SPrimer A | CCGAATTCGT CGACAACCTG GTTGATCCTG CCAGT | Medlin et al. (1988) | Algae (Stichococcus etc.) |
18S rRNA gene | Forward | 18S1Fh | AACCTGGTTG ATCCTGCC | Nakahara et al. (2004) | Algae, Vascular plants (Lactuca, Sisymbrium etc.) |
18S rRNA gene | Forward | 18S2Fh | GTTGATCCTG CCAGTAGTCA | Nakahara et al. (2004) | Algae |
18S rRNA gene | Forward | 18SNS1 | GTAGTCATAT GCTTGTCTC | White et al. (1990); Kocher & White (1992) | Fungi, Algae (Stichococcus etc.), Vascular plants (Lactuca etc.) |
18S rRNA gene | Forward | 18S323 | CGATGGTAGG ATAGAGG | Handa et al. (2003) | Algae (Stichococcus etc.) |
18S rRNA gene | Forward | 18S410 | CCACATCCAA GGAAGGCAGC | Handa et al. (2003) | Algae (Stichococcus etc.), Vascular plants (Lactuca, Sisymbrium etc.) |
18S rRNA gene | Forward | 18S575 | CGGTAATTCC AGCTCCA | Handa et al. (2003 | Algae (Stichococcus etc.), Vascular plants (Lactuca etc.) |
18S rRNA gene | Forward | 18S705 | GGCTCCTGGG CTTCACTG | Handa et al. (2003) | Algae (Stichococcus etc.) |
18S rRNA gene | Forward | 18S921 | GAAAGACGAA CTACTGCGA | Handa et al. (2003) | Algae (Stichococcus etc.), Vascular plants (Lactuca, Sisymbrium etc.) |
18S rRNA gene | Forward | 18S1171 | GCTTAATTTG ACTCAACAC | Tsubota et al. (2012) | Algae, Vascular plants (Lactuca etc.) |
18S rRNA gene | Forward | 18S1208 | TACCAGGTCC AGACATAGTG AGG | Handa et al. (2003) | Algae (Stichococcus etc.) |
18S rRNA gene | Forward | 18S1288 | TGGGTTGCCT TGTCA | Nakahara et al. (2004) | Algae |
18S rRNA gene | Forward | 18S1307 | ACGAGACCTC AGCCTGCT | Nakahara et al. (2004) | Algae |
18S rRNA gene | Forward | 18S1421 | CAGGTCTGTG ATGCCCTTAG A | Nakahara et al. (2004) | Algae, Vascular plants (Lactuca, Sisymbrium etc.) |
ITS | Forward | 18S1659B | CGTCGCTCCT ACCGATTG | Oguri et al. (2003) | Bryophytes (Leucobryum etc.), Vascular plants (Halophila, Lactuca, Sisymbrium etc.) |
ITS | Forward | 18S1764B | AGAGGAAGGA GAAGTCGTAA C | Oguri et al. (2003) | Bryophytes (Leucobryum etc.), Vascular plants (Halophila, Lactuca, Sisymbrium etc.) |
ITS | Forward | 18SrDNAHTF1 | AAGGTTTCCG TAGGTGAACC TGC | Tsubota et al. (2012) | Vascular plants (Lactuca, Sisymbrium etc.) |
ITS | Forward | 18srRNA | TCCGTAGGTG AACCTGCGG | Oguri et al. (2003) | Bryophytes (Leucobryum etc.), Vascular plants (Halophila, Sisymbrium etc.) |
ITS | Forward | 5.8S10B | CTCAGCAACG GATATCTTGG | Oguri et al. (2003) | Bryophytes (Leucobryum etc.), Vascular plants (Halophila etc.) |
ITS | Forward | 5srRNA | ACGATGAAGA ACGCAGCG | Oguri et al. (2003) | Bryophytes (Leucobryum etc.), Vascular plants (Halophila etc.) |
ITS | Forward | 5.8S43H | GAAGAACGTA GCGAAATGCG A | Tsubota et al. (2009) Halophila Hikobia | Vascular plants (Halophila, Lactuca, Sisymbrium etc.) |
ITS | Forward | 5.8S51HV | TAGCGAAATG CGATACTTGG | Tsubota et al. (2013) Sisymbrium Hikobia | Vascular plants (Sisymbrium etc.) |
ITS | Forward | 5.8S114HV | AGTTGCGCCC GAAGC | Tsubota et al. (2013) Sisymbrium Hikobia | Vascular plants (Sisymbrium etc.) |
ITS | Reverse | 26S166BR | GAGGACGCTT CTCCAGACTA C | Oguri et al. (2003) | Bryophytes (Leucobryum etc.), Vascular plants (Halophila, Lactuca, Sisymbrium etc.) |
ITS | Reverse | 26S102BR | CCGGTTCGCT CGCCG | Oguri et al. (2003) | Bryophytes (Leucobryum etc.), Vascular plants (Halophila, Lactuca, Sisymbrium etc.) |
ITS | Reverse | 25srRNA | TCCTCCGCTT AGTGATATGC | Oguri et al. (2003) | Bryophytes (Leucobryum etc.), Vascular plants (Halophila, Sisymbrium etc.) |
ITS | Reverse | 26SrDNAHTR1 | AAGGGAATCC TTGTAAGTTT CT | Tsubota et al. (2012) | Vascular plants (Lactuca, Sisymbrium etc.) |
ITS | Reverse | 26SrDNAHTR2 | AAGTTTCTTT TCCTCCGCTT A | Tsubota et al. (2012) | Vascular plants (Lactuca, Sisymbrium etc.) |
ITS | Reverse | 5.8S124HR | CGGGCGCAAC TTGCGTTCA | Tsuota et al. (2009) | Vascular plants (Halophila, Lactuca, Sisymbrium etc.) |
ITS | Reverse | 5.8S102BR | ACTCGATGAT TCGCGGA | Oguri et al. (2003) | Bryophytes (Leucobryum etc.), Vascular plants (Halophila etc.) |
ITS | Reverse | 5srRNAR | CGCTGCGTTC TTCATCGT | Handa et al. (2003); Oguri et al. (2003) | Algae (Stichococcus etc.), Bryophytes (Leucobryum etc.), Vascular plants (Halophila, Sisymbrium etc.) |
18S rRNA gene & ITS | Reverse | 5.8SR-1 | Handa et al. (2003) | Algae (Stichococcus etc.) | |
18S rRNA gene & ITS | Reverse | 5srRNAR | CGCTGCGTTC TTCATCGT | Handa et al. (2003) | Algae (Stichococcus etc.) |
18S rRNA gene | Reverse | 18Sprimer B | CCCGGGATCC AAGCTTGATC CTTCTGCAGG TTCACCTAC | Medlin et al. (1988) | Algae (Stichococcus etc.) |
18S rRNA gene | Reverse | 18S3Rh | TGATCCTTCT GCAGGTTC | Nakahara et al. (2004) | Algae, Vascular plants (Lactuca, Sisymbrium etc.) |
18S rRNA gene | Reverse | 18S4Rh | CTGCAGGTTC ACCTACGGA | Nakahara et al. (2004) | Algae |
18S rRNA gene | Reverse | 18S1617R | CAGGGACGTA ATCAACGC | Handa et al. (2003) | Algae (Stichococcus etc.), Vascular plants (Lactuca etc.) |
18S rRNA gene | Reverse | 18S1442R | TCTAAGGGCA TCACAGAC | Handa et al. (2003) | Algae (Stichococcus etc.), Vascular plants (Lactuca, Sisymbrium etc.) |
18S rRNA gene | Reverse | 18S1125R | CAGCCTTGCG ACCATACTCC | Handa et al. (2003) | Algae (Stichococcus etc.) |
18S rRNA gene | Reverse | 18S909R | CCAAGAATTT CACCTCTGAC | Handa et al. (2003) | Algae (Stichococcus etc.), Vascular plants (Lactuca, Sisymbrium etc.) |
18S rRNA gene | Reverse | 18SNS2 | GGCTGCTGGC ACCAGACTTG C | White et al. (1990); Kocher & White (1992) | Fungi, Algae (Stichococcus etc.), Vascular plants (Lactuca, Sisymbrium etc.) |
18S rRNA gene | Reverse | 18S325R++ | CGAAAGTTGA TAGGGCAG | Tsubota et al. (2012) | Algae, Vascular plants (Lactuca etc.) |
References
- Handa, S., Nakahara, M., Tsubota, H., Deguchi, H. & Nakano, T. 2003. A new aerial alga, Stichococcus ampulliformis sp. nov. (Trebouxiophyceae, Chlorophyta) from Japan. Phycol. Res. 51: 203-210.
- Tsubota, H., Kubo, H. & Mukai, S. 2009. A new finding of seagrass Halophila nipponica J.Kuo (Hydrocharitaceae) from Miyajima Island in Hiroshima Prefecture, SW Japan. Hikobia 15: 339-347 (in Japanese with English Abstract and Tables). [坪田博美・久保晴盛・向井誠二. 2009. 広島県宮島近海で見つかったヤマトウミヒルモHalophila nipponica J.Kuoについて. Hikobia 15: 339-347.]
- Tsubota, H., Kubo, H., Takeuchi, K., Nakahara-Tsubota, M., Inoue, Y., Uchida, S. & Mukai, S. 2012. Notes on naturalized plants in Hiroshima Prefecture: 3. New locality and nrITS variation of Lactuca serriola L. (Asteraceae). Hikobia 16: 197-202 (in Japanese with English Abstract and Tables). [坪田博美・久保晴盛・武内一恵・中原-坪田美保・井上侑哉・内田慎治・向井誠二. 2012. 広島の帰化植物3.トゲヂシャとマルバトゲヂシャ. Hikobia 16: 197-202.]
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