Supplementary data

Supplementary data

Hikobia

The files of Supplementary Figs. S1 & S2 of Nakamura et al. (2023)

• Nakamura, H., Koyama, Y., Phan, Q. C., Nakahara-Tsubota, M. & Tsubota, H. 2023. A note on vascular plants in Miyajima Island, Hiroshima Prefecture, SW Japan: Carpinus japonica and C. laxiflora (Betulaceae), and Lonicera affinis (Caprifoliaceae). Hikobia 19: 37-47. (in Japanese)
  • Supplementary figures
    • ファイル:FigS1 Nakamura et al 2023 Hikobia.pdf
      • Supplemental Fig. S1. Phylogenetic tree of the family Betulaceae based on nucleotide sequences of the nuclear ITS regions, depicted by RAxML-NG version 1.2.0. The evolutionary history was inferred by using the maximum likelihood (ML) method based on the JC model. Accession numbers were listed behind each name. Statistical support values more than 50 % obtained by RAxML-NG for bootstrap probabilities (BP) with 10,000 replicates are shown next to the branches. The tree is drawn to scale, with branch lengths measured in the number of substitutions per site. The root is arbitrarily placed on the branch leading to the clade which includes species of the Ticodendron incognitum and Myrica gale var. tomentosa, following Yang et al. (2021) and Stevens (2023).
    • ファイル:FigS2 Nakamura et al 2023 Hikobia.pdf
      • Supplemental Fig. S2. Phylogenetic tree of the family Caprifoliaceae based on nucleotide sequences of the chloroplast atpB-rbcL region, depicted by RAxML-NG version 1.2.0. The evolutionary history was inferred by using the maximum likelihood (ML) method based on the TVM + I + Γ model. Accession numbers were listed behind each name. Statistical support values more than 50 % obtained by RAxML-NG for bootstrap probabilities (BP) with 10,000 replicates are shown next to the branches. The tree is drawn to scale, with branch lengths measured in the number of substitutions per site. The root is arbitrarily placed on the branch leading to the clade which includes species of the subfamily Diervilliodeae, following Lee et al. (2021) and Wang et al. (2020).

The files of Supplementary Data 1-3 of Sheng et al. (2022)

• Sheng, Z.-P., Wasaki, J. & Tsubota, H. 2022. A preliminary study on the influence of invasive plant through allelopathy: effects of Chinese tallow tree, Triadica sebifera (Euphorbiaceae), on its rhizosphere microbial community in Miyajima Island, SW Japan. Hikobia 18: 199-220.
  • Supplementary data. The files of Supplementary Data 1-3 can be downloadable via the web link https://www.digital-museum.hiroshima-u.ac.jp/~main/index.php/Supplementary_data.
    • ファイル:Appendix5 Supplementary data 1 Sheng et al 2022 Hikobia.xls
      • Appendix 5. Supplementary data 1: the relative abundance with log-transformation of OTUs between M (N = 3) and S (N = 3) groups. M responds to the native site (Murohama); S responds to the invasive site (Shobunjo).
    • ファイル:Appendix6 Supplementary data 2 Sheng et al 2022 Hikobia.xls
      • Appendix 6. Supplementary data 2: all predicted bacterial metabolic pathways between M (N = 3) and S (N = 3) groups. M responds to the native site (Murohama); S responds to the invasive site (Shobunjo).
    • ファイル:Appendix7 Supplementary data 3 Sheng et al 2022 Hikobia.xls
      • Appendix 7. Supplementary data 3: the two predicted potential degradation of allelopathic compounds pathway, as well as associated bacterial groups between M (N = 3) and S (N = 3) groups. M responds to the native site (Murohama); S responds to the invasive site (Shobunjo).

The pdf files of Supplementary Figures S1 & S2 of Phan et al. (2021)

• Phan, Q. C., Nakahara-Tsubota, M., Inoue, Y. & Tsubota, H. 2021. New record of Dysphania pumilio (Amaranthaceae) for Hiroshima Prefecture, southwest Japan. Hikobia 18: 145-156.
  • Supplementary figures
    • ファイル:FigS1 Phan et al 2021 Hikobia.pdf
      • Fig. S1. Phylogenetic tree of the family Amaranthaceae based on the nuclear ribosomal internal transcribed spacer (ITS) region, depicted by RAxML-NG version 0.9.0git. The evolutionary history was inferred by using the maximum likelihood method based on the SYM + I + G model. Accession numbers were listed behind each name. Statistical support values more than 50 % obtained by RAxML-NG for bootstrap probabilities (BP) with 10,000 replicates and BEAST for Bayesian posterior probabilities (PP) with 10,000,000 replicates are shown on or near nodes (BP/PP). The tree was rooted at the midpoint. The pdf of Supplementary Figure S1 can be downloadable via the web link https://www.digital-museum.hiroshima-u.ac.jp/~main/index.php/Supplementary_data.
    • ファイル:FigS2 Phan et al 2021 Hikobia.pdf
      • Fig. S2. Phylogenetic tree of the family Amaranthaceae based on the chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit (rbcL) gene sequence, depicted by RAxML-NG version 0.9.0git. The evolutionary history was inferred by using the maximum likelihood method based on the TVM + I + G model. Accession numbers were listed behind each name. Statistical support values more than 50 % obtained by RAxML-NG for bootstrap probabilities (BP) with 10,000 replicates and BEAST for Bayesian posterior probabilities (PP) with 10,000,000 replicates are shown on or near nodes (BP/PP). The tree was rooted at the midpoint. The pdf of Supplementary Figure S2 can be downloadable via the web link https://www.digital-museum.hiroshima-u.ac.jp/~main/index.php/Supplementary_data.